PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj1g3v3847230.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family WRKY
Protein Properties Length: 160aa    MW: 18563.7 Da    PI: 9.7768
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj1g3v3847230.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY104.36.4e-3381139159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      ldDgy+WrKYGqK vk+++fprsYYrCt++gC+vkk+v+r ++d+ vv++tYeg H+h+
  Lj1g3v3847230.1  81 LDDGYRWRKYGQKAVKNNKFPRSYYRCTHHGCNVKKQVQRLTKDEGVVVTTYEGVHTHP 139
                      59********************************************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.4E-3466139IPR003657WRKY domain
SuperFamilySSF1182907.72E-3073140IPR003657WRKY domain
PROSITE profilePS5081129.58576141IPR003657WRKY domain
SMARTSM007745.1E-3981140IPR003657WRKY domain
PfamPF031068.9E-2782139IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000122Biological Processnegative regulation of transcription from RNA polymerase II promoter
GO:0010055Biological Processatrichoblast differentiation
GO:0032107Biological Processregulation of response to nutrient levels
GO:0043620Biological Processregulation of DNA-templated transcription in response to stress
GO:0048527Biological Processlateral root development
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MENNNNYSML FPCPSSSTSV VGSSHNGYSG LNNDHQFEKR VEDARDGILS QINVSDNKKK  60
GEKKARKPRY AFQTRSQVDI LDDGYRWRKY GQKAVKNNKF PRSYYRCTHH GCNVKKQVQR  120
LTKDEGVVVT TYEGVHTHPI EKTTDNFEHI LNQMQIYTPF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-2771140776Probable WRKY transcription factor 4
2lex_A2e-2771140776Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.106320.0root
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00506DAPTransfer from AT5G13080Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1421240.0BT142124.1 Lotus japonicus clone JCVI-FLLj-20G12 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007161664.13e-74hypothetical protein PHAVU_001G088200g
RefseqXP_014523830.12e-74PREDICTED: probable WRKY transcription factor 75
SwissprotQ9FYA24e-58WRK75_ARATH; Probable WRKY transcription factor 75
TrEMBLI3SNS61e-119I3SNS6_LOTJA; Uncharacterized protein
STRINGGLYMA16G05880.12e-69(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF115634110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13080.17e-59WRKY DNA-binding protein 75